Subset gnomAD v3.1 to AMR, AFR, HGDP, and 1KG samples from variant QC tables

broadinstitute / gnomad_local_ancestry

Hail batch pipeline and scripts for local ancestry inference

MIT License

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Subset gnomAD v3.1 to AMR, AFR, HGDP, and 1KG samples from variant QC tables #2

Closed gtiao closed 3 years ago

gtiao commented 4 years ago

Mike will perform rough variant QC on callrate and MAF

mike-w-wilson commented 3 years ago

Subsets are complete for samples and reference panels: gs://gnomad-mwilson/lai/sample_selection/ref_to_run.tsv gs://gnomad-mwilson/lai/sample_selection/amr_to_run.tsv

See other tickets for specifics.