reproducing with updated dependencies

broadinstitute / grit-benchmark

Benchmarking a metric used to evaluate a perturbation strength

BSD 3-Clause "New" or "Revised" License

5 stars 5 forks source link

reproducing with updated dependencies #36

Closed alxndrkalinin closed 1 year ago

alxndrkalinin commented 1 year ago

updated environments compatible with Apple silicon (#34)
refactored code to be compatible with updated dependencies
reproduced all analysis, except for single cell Cell Health data
added black formatting, with github actions and pre-commit

alxndrkalinin commented 1 year ago

Happy new year @gwaybio! I wanted to confirm that you're not going to review PRs for this repo, only for cytominer-eval, and I can merge without review.

gwaybio commented 1 year ago

I view this repo as entirely handed over to you for your preferred maintenance plan. I don't have time for full scale reviews, but I'd be happy to offer my eyes for targeted requests. Thanks for clarifying!

alxndrkalinin commented 1 year ago

Sounds good, thanks!