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broadinstitute / gtex-pipeline

GTEx & TOPMed data production and analysis pipelines
BSD 3-Clause "New" or "Revised" License
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missing "qtl" module in leafcutter prepare script #76

Closed lw157 closed 2 years ago

lw157 commented 2 years ago

I found the problem. I need to install "pyqtl" first.

It is quite confusing about "qtl.io" in the this scripts: https://github.com/broadinstitute/gtex-pipeline/blob/master/qtl/leafcutter/src/cluster_prepare_fastqtl.py

Where is the "qtl" module?