Population-based phasing reference panel

broadinstitute / gtex-pipeline

GTEx & TOPMed data production and analysis pipelines

BSD 3-Clause "New" or "Revised" License

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Population-based phasing reference panel #78

Closed teng-gao closed 1 year ago

teng-gao commented 2 years ago

Hi,

I was wondering which population phasing reference panel (1000G? HRC?) was used to pre-phase the WGS genotypes in the GTEx v8 VCFs, since I could not find that information on the GTEx website or publications.

Thanks, Teng

francois-a commented 1 year ago

Please see Section 2.4 in the supplement of the 2020 GTEx paper for details on the phasing.