I was using the "collapse_annotations.py" script to prepare a reference for RNASeQC, as suggested in its docs. I got an error running it on an NCBI genome GTF due to empty annotations, e.g. transcript_id "";. The purpose of this PR is to skip empty annotations and allow processing of these files.
I was using the "collapse_annotations.py" script to prepare a reference for RNASeQC, as suggested in its docs. I got an error running it on an NCBI genome GTF due to empty annotations, e.g.
transcript_id "";. The purpose of this PR is to skip empty annotations and allow processing of these files.