I was trying to run the command using:
python3 collapse_annotation.py gencode.vM25.annotation.gtf gencode.vM25.genes.gtf
I used anacondas environment to use python3, and use gencode.vM25.annotation.gtf as input and output is supposed to be gencode.vM25.genes.gtf. I got the following error and I don't know what to do:
File "/gpfs/gibbs/project/sestan/cq39/PMID_30678683/combined_bams/collapse_annotation.py", line 76
gtex-pipeline/gene_model/collapse_annotation.py at master · broadinstitute/gtex-pipeline · GitHub
I was trying to run the command using:
python3 collapse_annotation.py gencode.vM25.annotation.gtf gencode.vM25.genes.gtf
I used anacondas environment to use python3, and use gencode.vM25.annotation.gtf as input and output is supposed to be gencode.vM25.genes.gtf. I got the following error and I don't know what to do:
Thanks