broadinstitute / ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
GNU General Public License v3.0
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correctedDepth.txt File interval missing #113

Open zhangyafeng1 opened 1 year ago

zhangyafeng1 commented 1 year ago

hello!

When I detect CNV with a 200KB window, some intervals are missing in the correctedDepth.txt file, as shown below, the intervals are not continuous, is there any way to get continuous intervals? Thank you for your help!!

file

Is the log2_TNratio_corrected of the missing interval is NA ?, but in the figure below, the missing interval is not marked with NA, what is the reason for the missing interval? Thank you!

image