Open yaotianran opened 1 year ago
I'm also getting the same error using ichorCNA in apptainer on a cluster (from here).
Is it a chromosome naming thing?
Edit: If you add --lambda 'c(1500,1500,1500,1500) to Rscript runIchorCNA.R the error goes (sadly the be replaced by another). So looks like it's failing to calculate lambdas from the data.
@yaotianran, I got the same error, and my solution is replacing ichorCNA to Broad version 0.3.2
@hyunhwan-jeong How to replaced ichorCNA to Broad version 0.3.2?
@teacakedeadlift Have you found any solution for your problem?
@yaotianran Have you found any solution to the problem ?
@Salaheddinekacimi I just installed using devtools::install_github("broadinstitute/ichorCNA")
, and I guess @yaotianran installed one from https://github.com/GavinHaLab/ichorCNA
@hyunhwan-jeong I tried the last release of the package and it did not work in my corrected depth of coverage file generated there are only infinite value. N.B: I am doing the analysis on targeted sequencing data
Hi, is there any update on this error?
When I run ichorCNV, no matter which coordinate I used, it always raised the following error. SRR2130035_hg38.wig The packages I installed in R