broadinstitute / ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
GNU General Public License v3.0
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Add config option for people with color vision defficiency #119

Open moldovannorbert opened 1 year ago

moldovannorbert commented 1 year ago

To my best knowledge there is no easy way (through the config file) to set a CVD-friendly color palette for the output. I would suggest a grayscale image with different shapes as losses and gains.

ilykos commented 10 months ago

@moldovannorbert I have attempted to rewrite the output to use + and - signs, here are some issues I have discovered:

What I ended up with is presenting each chromosome with a vertical KDE plot on genomeWide, and displaying individual bin datapoints in the single chromosome plot.