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broadinstitute / ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
GNU General Public License v3.0
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Error in .order_seqlevels(chrom_sizes[, "chrom"]) : #120

Open ekushele opened 1 year ago

ekushele commented 1 year ago

Hello, I'm trying to run ichorCNA, but get the error:

Error in .order_seqlevels(chrom_sizes[, "chrom"]) :
  !anyNA(m32) is not TRUE
Calls: getSeqInfo ... FETCH_ORDERED_CHROM_SIZES -> .order_seqlevels -> stopifnot
Execution halted

It worked until a month ago, and I found it crashes because UCSC updated there genome assembly (https://github.com/Bioconductor/GenomeInfoDb/issues/82#issuecomment-1409252404).

What can I do?