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broadinstitute / ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
GNU General Public License v3.0
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Panel of Normal Documentation Incomplete #34

Closed rahulram70 closed 6 years ago

rahulram70 commented 6 years ago

Hey guys,

Could you please let me know what each parameter means for createPanelOfNormals.R? Thank you.

Rscript createPanelOfNormals.R --filelist /path/to/wig_files.txt \ --gcWig /path/to/gc.wig --mapWig /path/to/map.wig \ --centromere /path/to/centromeres_file.txt \ --outfile base_outfile_name

gavinha commented 6 years ago

Hi @rahulram70

I updated the wiki with more information. Please let me know if you have any other questions or need more clarification.

Best, Gavin