Which UCSC hg19 mappability BigWig file should be used for different bins?

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Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

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Which UCSC hg19 mappability BigWig file should be used for different bins? #47

Closed wisekh6 closed 5 years ago

wisekh6 commented 5 years ago

Hi Gavin,

The UCSC has two hg19 mappability BigWig files:

wgEncodeDukeMapabilityUniqueness20bp.bigWig wgEncodeDukeMapabilityUniqueness35bp.bigWig Would you guide about which file is an input to the following HMM Copy Utils command?

Usage: ./mapCounter [options] Thanks in advance,

wisekh6 commented 5 years ago

Sorry. I just figured out. Thanks,

lisajq commented 1 year ago

@wisekh6 ,Hi, wisekh6 could you tell me which mer.bigWig file should be used?