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broadinstitute / ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
GNU General Public License v3.0
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Conda recipe is broken on linux #51

Open mheskett opened 5 years ago

mheskett commented 5 years ago

Hi there,

Thanks for this great tool. We have confirmed that your anaconda recipe is broken on linux installations. We simply created a fresh conda environment and use

conda install -c bioconda r-ichorcna

and get the error message:

`UnsatisfiableError: The following specifications were found to be in conflict:

Conda is a widely use and extremely useful tool so it will be a worthy investment to fix this.

Thanks

kyleabeauchamp commented 5 years ago

The problem is likely that you also need to include the conda-forge channel -c conda-forge to pick up the R packages. However, I also noticed a couple of missing packages that you might still need to manually install afterwards.