Typo in utils.R - Githubissues

broadinstitute / ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.

GNU General Public License v3.0

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Closed MUppal closed 5 years ago

MUppal commented 5 years ago

Hi Professor Ha,

There is a typo in utils.R on line 123. The line reads: seqlevlesStyle(targetedSequences) <- genomeStyle

It should read: seqlevelsStyle(targetedSequences) <- genomeStyle

This typo causes runIchorCNA.R to fail if passing a bed file with exon regions.