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broadinstitute / ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
GNU General Public License v3.0
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Annotate the cna file with gene name #62

Open TendoLiu opened 4 years ago

TendoLiu commented 4 years ago

Hi All, Is it possible to annotate the cna output file with gene name? The default output CNA plot pdf is beautiful but could not provide information at gene resolution. I am talking about something like this: https://cnvkit.readthedocs.io/en/stable/scripts.html the cnv_annotate.py script.

Best wishes, Tendo