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broadinstitute / ichorCNA

Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
GNU General Public License v3.0
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After I installed it , Script directory not find #74

Open zhangyafeng1 opened 4 years ago

zhangyafeng1 commented 4 years ago

hi After I installed it according to the first method ， I didn't find the script directory ， could you help me ? Is there a problem with my installation ？

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Thank you !

gavinha commented 4 years ago

Hi @zhangyafeng1 ,

Please do a git pull of this repo and you will have the scripts. In the snakemake config.yaml, you can point to the R scripts that you pull from this repo.

Best, Gavin

aneichyk commented 3 years ago

I second this issue. After trying to install using install_github and install_git the script directory is absent. I also noticed that during the installation there is a message 

_  checking for empty or unneeded directories
   Removed empty directory _ichorCNA/scripts_

I also noticed that .Rinstignore and .Rbuildignore have scripts/ listed in them. The only way to obtain all pieces of the software is through cloning the repo, and do not remove the repo after installation. I hope this helps.