Can anyone explain what each column is in the cna.seg output?
I understand the following:
chr - chromosome number
start - start of chromosome bin
end - end of bin
But what exactly are these values?
copy.number - is this the uncorrected copy number of that bin?
event - ?
logR - what is this the logR of? I see many negative numbers and positive ones that end up being called NEUT? How is this calculated? Is this number used to determine the logR_Copy_Number?
subclone.status - is this if there is a subclone present or not? 1 = present, 0=not present?
Corrected_Copy_Number
Corrected_Call
logR_Copy_Number
Can anyone explain what each column is in the cna.seg output?
I understand the following: chr - chromosome number start - start of chromosome bin end - end of bin
But what exactly are these values? copy.number - is this the uncorrected copy number of that bin? event - ? logR - what is this the logR of? I see many negative numbers and positive ones that end up being called NEUT? How is this calculated? Is this number used to determine the logR_Copy_Number? subclone.status - is this if there is a subclone present or not? 1 = present, 0=not present? Corrected_Copy_Number Corrected_Call logR_Copy_Number
Thank you in advance!