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broadinstitute / infercnv

Inferring CNV from Single-Cell RNA-Seq
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infercnv for bulk RNA-seq data #296

Closed reuvenieli00 closed 2 years ago

reuvenieli00 commented 3 years ago

Hi,

I am new to this tool,

First question: wanted to check if I can use it for bulk data of RNA-seq

Second question: can I use for the annotation file any genome of interest (not only human), of course that the expression matrix will have equivalent gene name as the annotation.

Thanks!!

DarioS commented 3 years ago

Duplicate of #141.

GeorgescuC commented 3 years ago

Hi @reuvenieli00 ,

For your second question, yes you can use any genome of interest for the gene order as long as the names match those in the count matrix.

Regards, Christophe.