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broadinstitute / infercnv

Inferring CNV from Single-Cell RNA-Seq
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Error in readRDS(reload_info$expected_file_names[[i]]) : error reading from connection #435

Closed naddoun closed 2 years ago

naddoun commented 2 years ago

Hi InferCNV team,

I've been trying to iterate through inferCNV. It seems to work for iteration 0 and iteration 1. However, when I try looping through a second time, I get an error during step 8. A part of the directory is already populated, and the code produces the following error:

Error in readRDS(reload_info$expected_file_names[[i]]) : error reading from connection

I've tried re-installing inferCNV as some previous posts have suggested, to no avail. I was wondering if someone could help me troubleshoot this.

Thanks so much,

Roeply commented 1 year ago

@naddoun hi, I also meet the same error in STEP 14. I wonder how did you solve this error?

TIPPLERXIE commented 7 months ago

@Roeply Because I had previously run the code and generated an output directory, the error occurred when I ran it again. However, when I deleted that directory, the code ran without any issues.