Error in UseMethod("is.rooted") : no applicable method for 'is.rooted' applied to an object of class "NULL"

[AntoniaChroni]

Hey,

I am getting the following error message at step 15. Any thoughts on what that is about, and how to fix this?

Error in UseMethod("is.rooted") : no applicable method for 'is.rooted' applied to an object of class "NULL"

Thanks, Tonia

[GeorgescuC]

Hi @AntoniaChroni ,

Seems to be the same issue as in #475 , would you be able to privately share the backup object and commands you ran so I can try to debug the issue?

Regards, Christophe.

[AntoniaChroni]

Sure, I can do that. How can I share the data and script with you?

Best, Tonia

---

*Antonia (Tonia) Chroni*, PhD

Postdoctoral fellow, Perlmutter Cancer Center

Department of Pathology

Applied Bioinformatics Laboratories

NYU School of Medicine

550 First Avenue, Smilow Research Building (1311)

13th Floor, New York, NY 10016, USA

Website: https://antoniachroni.github.io/

Email: @.***

On Fri, Feb 24, 2023 at 1:12 PM GeorgescuC @.***> wrote:

Hi @AntoniaChroni https://github.com/AntoniaChroni ,

Seems to be the same issue as in #475 https://github.com/broadinstitute/infercnv/issues/475 , would you be able to privately share the backup object and commands you ran so I can try to debug the issue?

Regards, Christophe.

— Reply to this email directly, view it on GitHub https://github.com/broadinstitute/infercnv/issues/514#issuecomment-1444176295, or unsubscribe https://github.com/notifications/unsubscribe-auth/ALBOW2HIQB3YTEZO64BF7K3WZD22LANCNFSM6AAAAAAVG6HWAA . You are receiving this because you were mentioned.Message ID: @.***>

[AntoniaChroni]

@GeorgescuC sure, just let me know how I can share these with you.

[GeorgescuC]

Hi @AntoniaChroni ,

You can find my email in the DESCRIPTION file.

Regards, Christophe.