unable to open connection to X11 display

broadinstitute / infercnv

Inferring CNV from Single-Cell RNA-Seq

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unable to open connection to X11 display #575

Open suhuanhou opened 1 year ago

suhuanhou commented 1 year ago

Hello, I'm trying to run infercnv for a large integrated dataset with 100,000 cells.

However, when I run it, I always get an error saying that the PNG file is too large.

Even when I set options(bitmapType="Xlib"), I still get an error message saying "unable to open connection to X11 display" in png(paste(out_dir, paste(output_filename, ".png", sep = "").

How can I solve this problem?

Cathy94 commented 1 year ago

I also meet this problem. Do you solve this problem?

suhuanhou commented 1 year ago

Maybe we need to reduce the number of cells and reduce computation.