Hi,
I ran into an error when infercnv::run is doing step18. Here is the error message:
STEP 18: Run Bayesian Network Model on HMM predicted CNV's
INFO [2023-08-03 14:54:17] Creating the following Directory: 3_epi/epi_infercnv/inferCNV_output_p2/BayesNetOutput.HMMi6.rand_trees.hmm_mode-subclusters
INFO [2023-08-03 14:54:17] Initializing new MCM InferCNV Object.
INFO [2023-08-03 14:54:17] validating infercnv_obj
Error in (function (cl, name, valueClass) :
assignment of an object of class “character” is not valid for @‘cnv_regions’ in an object of class “MCMC_inferCNV”; is(value, "factor") is not TRUE
Hi, I ran into an error when infercnv::run is doing step18. Here is the error message:
INFO [2023-08-03 14:54:17] Creating the following Directory: 3_epi/epi_infercnv/inferCNV_output_p2/BayesNetOutput.HMMi6.rand_trees.hmm_mode-subclusters INFO [2023-08-03 14:54:17] Initializing new MCM InferCNV Object. INFO [2023-08-03 14:54:17] validating infercnv_obj Error in (function (cl, name, valueClass) : assignment of an object of class “character” is not valid for @‘cnv_regions’ in an object of class “MCMC_inferCNV”; is(value, "factor") is not TRUE
I am using R version 4.2.2
The infercnv version is infercnv_1.3.3. I downloaded the installation package at https://github.com/broadinstitute/infercnv/releases, which showed its updated date was Feb 8, 2020. Many thanks, Joya