Hello
I'm trying to understand the residual expression scale in infercnv.png ("Modified Expression"):
The plots seem to have a scale ~ 0.6 to 1.4, but when I look at
exp <- read.table("expr.infercnv.dat")range(expr)
I get
[1] 0.6650464 3.4663837
1) Is the expression normalized such that 1 means no over/under expression, that is, a state 3 in the i6 HMM?
2) Are the upper/ lower bounds to this scale, such that a state 6 has always the same maximum expression? Or is this dependent upon the data?
Thanks!
Hello I'm trying to understand the residual expression scale in infercnv.png ("Modified Expression"): The plots seem to have a scale ~ 0.6 to 1.4, but when I look at
exp <- read.table("expr.infercnv.dat")range(expr)I get[1] 0.6650464 3.46638371) Is the expression normalized such that 1 means no over/under expression, that is, a state 3 in the i6 HMM? 2) Are the upper/ lower bounds to this scale, such that a state 6 has always the same maximum expression? Or is this dependent upon the data? Thanks!