do you know how to remove the horizontal lines shows on the heatmap and stop writing General_HCL_all_observations_s100_members.txt files? as these are not useful at all.
I checked our source code and set the parameter like plot_cnv(
infercnv_obj<-infCNVNoGroup,
plot_chr_scale=F,
contig_cex = 2, # 2 is the best choice
title = "InferCNVP2_Spots",
obs_title="Observations (Cells)",
ref_title="References (Cells)",
cluster_by_groups=F,
x.center=1,
x.range="auto",
hclust_method='ward.D',
color_safe_pal=FALSE,
output_filename="infercnv",
output_format="png",
png_res=300,
dynamic_resize=0,
Dear inferCNV team,
do you know how to remove the horizontal lines shows on the heatmap and stop writing General_HCL_all_observations_s100_members.txt files? as these are not useful at all. I checked our source code and set the parameter like plot_cnv( infercnv_obj<-infCNVNoGroup, plot_chr_scale=F, contig_cex = 2, # 2 is the best choice title = "InferCNVP2_Spots", obs_title="Observations (Cells)", ref_title="References (Cells)", cluster_by_groups=F, x.center=1, x.range="auto", hclust_method='ward.D', color_safe_pal=FALSE, output_filename="infercnv", output_format="png", png_res=300, dynamic_resize=0,
num_threads = 12,
k_obs_groups = 1, write_expr_matrix = FALSE, write_phylo = FALSE )
it doesn't work as well.
@GeorgescuC