I am analyzing my scRNA-seq data and I have 12 samples. I have run inferCNV on each one of my samples and have all the results.
Now I want to combine all the results and draw a heatmap that illustrates the CNV score of each cell in each genomic region, exactly like the picture below.
However, the problem is that I cannot find the data that shows the CNV score of each cell in each genomic region.
I would greatly appreciate your help if you could solve this issue for me.
Hi everyone,
I am analyzing my scRNA-seq data and I have 12 samples. I have run inferCNV on each one of my samples and have all the results. Now I want to combine all the results and draw a heatmap that illustrates the CNV score of each cell in each genomic region, exactly like the picture below. However, the problem is that I cannot find the data that shows the CNV score of each cell in each genomic region. I would greatly appreciate your help if you could solve this issue for me.
Best![Capture](https://github.com/broadinstitute/infercnv/assets/104236910/f13ce3e0-18ba-4b70-8b9e-1dbdc6fbaf91)