Plate causing numerical issues

broadinstitute / lincs-cell-painting

Processed Cell Painting Data for the LINCS Drug Repurposing Project

BSD 3-Clause "New" or "Revised" License

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Plate causing numerical issues #43

Open gwaybio opened 4 years ago

gwaybio commented 4 years ago

In the cell health project, I noticed some strange behavior with a specific plate.

The plate is SQ00015221 coming from plate map C-7161-01-LM6-011. The offending features seem to be based on Correlation_RWC.

We include the plate in this repo, but I am adding a note here that we should revisit. I have a sneaking suspicion that the issue stems from the missing values and zero issue noted in cytomining/pycytominer#79 and described in cytomining/cytominergallery#62

hkhawar commented 4 years ago

I have checked my variable list it was excluded from the analysis. Probably it got removed with the feature selection step using Cytominer scripts