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broadinstitute / lincs-cell-painting

Processed Cell Painting Data for the LINCS Drug Repurposing Project
BSD 3-Clause "New" or "Revised" License
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Make consensus_modz file available in GCT format #47

Closed shntnu closed 3 years ago

shntnu commented 4 years ago

See #46

Save file as GCT after this line

https://github.com/broadinstitute/lincs-cell-painting/blob/e6852b49992b4fa2f0d36cc07011856ebee6326a/consensus/scripts/nbconverted/build-consensus-signatures.py#L206-L208

Use https://github.com/cytomining/pycytominer/blob/master/pycytominer/write_gct.py

shntnu commented 3 years ago

We shouldn't fix this; see https://github.com/broadinstitute/lincs-cell-painting/pull/48#discussion_r598098847

@gwaygenomics feel free to reopen if you disagree.