search

broadinstitute / lincs-cell-painting

Processed Cell Painting Data for the LINCS Drug Repurposing Project
BSD 3-Clause "New" or "Revised" License
25 stars 13 forks source link

Adding batch 2 data #58

Closed gwaybio closed 3 years ago

gwaybio commented 3 years ago

The pipeline is slightly hacky (the recipe would fix this) but the profiles are now harmonized to the same pycytominer pipeline as batch 1 data. I add profiles, metadata, and cell counts in this PR.

gwaybio commented 3 years ago

I have not yet checked if the pipeline processed all plates as described in https://github.com/broadinstitute/lincs-cell-painting/issues/57#issuecomment-757392154, but the pipeline did not throw any errors.

gwaybio commented 3 years ago

let's do this in three pull requests

  1. Merge batch 2 profiles
  2. Merge #48
  3. Add batch 2 consensus signatures in a separate PR

@shntnu - will you be able to get to #48 this week?

shntnu commented 3 years ago

@shntnu - will you be able to get to #48 this week?

Miraculously, yes; done.