A reviewer asked why MOA predictions were poor and thought that making predictions with pathways instead might improve signal.
The first step in performing this analysis is to generate new y matrices. In this PR, I map compounds to targets and targets to Gene Ontology terms. I also form new y matrices with these labels.
This is part 1 of 2 PRs to perform the target and pathway prediction analysis
A reviewer asked why MOA predictions were poor and thought that making predictions with pathways instead might improve signal.
The first step in performing this analysis is to generate new y matrices. In this PR, I map compounds to targets and targets to Gene Ontology terms. I also form new y matrices with these labels.
This is part 1 of 2 PRs to perform the target and pathway prediction analysis