Re-org the workflows directory

broadinstitute / long-read-pipelines

Long read production pipelines

https://broadinstitute.github.io/long-read-pipelines/

BSD 3-Clause "New" or "Revised" License

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Re-org the workflows directory #242

Open SHuang-Broad opened 3 years ago

SHuang-Broad commented 3 years ago

The current organization is a little flat for technical limitations.

I've tested how to make relative import work with this repo.

Long story short, main workflows cannot use import .., i.e. they need to be root level relative to its dependencies, but the dependencies can cross-reference each other free-style. Just make sure the zip file reflect that.

SHuang-Broad commented 3 years ago

Just realized that, given the root-level, directly-Terra-runnable workflows can only live under wdl/, we need a barebone Readme under wdl/ with 1-linear descriptions for every single workflow living under it.