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broadinstitute / long-read-pipelines

Long read production pipelines
https://broadinstitute.github.io/long-read-pipelines/
BSD 3-Clause "New" or "Revised" License
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Update DV-pepper pipelines for ONT #299

Open SHuang-Broad opened 2 years ago

SHuang-Broad commented 2 years ago

Based on a few runs, it looks like DV v1.3.0 is running faster, and produces much less verbose log files (1MB vs 0.5GB).

and DV-pepper for ONT data seems to have gone through similar significant improvements.

SHuang-Broad commented 2 years ago

it's out, find time to bring it in. https://github.com/kishwarshafin/pepper/issues/120