rebuild HMM inside subprocesses

broadinstitute / longbow

Annotation and segmentation of MAS-seq data

https://broadinstitute.github.io/longbow/

BSD 3-Clause "New" or "Revised" License

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rebuild HMM inside subprocesses #204

Closed jamestwebber closed 1 year ago

jamestwebber commented 1 year ago

This fixes some subtle weirdness with annotate. It appears that the pomegranate model might not be perfectly passed into a subprocess and this can result in small changes to the resulting fit (which was causing a failing integration test)