Why are some protein positions off by one?

broadinstitute / oncotator

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Closed LeeTL1220 closed 9 years ago

LeeTL1220 commented 9 years ago

From oncotator v1.4.1.0 with the uniprot transcript list

8   48776001    48776001    C   T   1903    p.S1902S
8   48772270    48772270    T   A   2037    p.S2036C

LeeTL1220 commented 9 years ago

These examples are in a gene that does not have an exact match for transcript.

LeeTL1220 commented 9 years ago

Looks like the UniProt proteins have a single amino acid that are not in the GENCODE v19 protein sequence, for some genes, including PRKDC

LeeTL1220 commented 9 years ago

No action to take.