broadinstitute / oncotator

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Oncotator lookup in VCF may not be correct #332

Open LeeTL1220 opened 9 years ago

LeeTL1220 commented 9 years ago

Using the ESP VCF as an example:

Lee Lichtenstein, for reference, here is a line from ESP that does not properly populate into MAFs: 1 55505552 ~rs67610340 ACTG ACTGCTGCTGCTG,ACTGCTGCTG,ACTGCTG,A . PASS DBSNP=dbSNP_130;EA_AC=61,21,797,190,6069;AA_AC=61,2,537,84,3012;TAC=122,23,1334,274,9081

The ESP columns are all blank for the following variant in my MAF: 1 55505552 -->CTG