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Docker image broadinstitute/oncotator:1.9.0.0 doesn't have a working ENTRYPOINT or CMD. #356

Closed alanhoyle closed 7 years ago

alanhoyle commented 7 years ago

running docker run -it broadinstitute/oncotator:1.9.0.0 dumps me to a Python interpreter command line rather than running the Oncotator command line program.

LeeTL1220 commented 7 years ago

Will be fixed in next release.

On Tue, Dec 20, 2016 at 3:51 PM, Alan Hoyle notifications@github.com wrote:

running docker run -it broadinstitute/oncotator:1.9.0.0 dumps me to a Python interpreter command line rather than running the Oncotator command line program.

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alanhoyle commented 7 years ago

I was able to create what might be a working one by running a docker build -t oncotator .

where cat ./Dockerfile contains:

FROM broadinstitute/oncotator:1.9.0.0 MAINTAINER oncotator oncotator@broadinstitute.org RUN cd oncotator/ && python setup.py install ENTRYPOINT ["Oncotator"]

LeeTL1220 commented 7 years ago

Try the 1.9.2.0 docker image.