Hi everyone,
I have successfully run the setup script, but I am stuck with this error while trying to install Oncotator. Any thoughts would be much appreciated. Thanks!
python setup.py install
[... everything is running ...]
pysam: htslib configure options: --enable-libcurl
pysam: libcurl of builtin htslib has been enabled, adding shared libcurl and libcrypto
package init file 'htslib/init.py' not found (or not a regular file)
package init file 'htslib/htslib/init.py' not found (or not a regular file)
package init file 'samtools/init.py' not found (or not a regular file)
package init file 'bcftools/init.py' not found (or not a regular file)
package init file 'samtools/win32/init.py' not found (or not a regular file)
warning: no files found matching 'KNOWN_BUGS'
warning: no files found matching 'THANKS'
warning: no files found matching 'samtools/configure'
warning: no files found matching 'samtools/config.mk.in'
warning: no files found matching 'samtools/config.h.in'
warning: no files found matching 'tests/pysam_data'
warning: no files found matching 'tests/tabix_data'
htslib/hfile_libcurl.c: In function ‘easy_errno’:
htslib/hfile_libcurl.c:93: error: ‘CURLE_NOT_BUILT_IN’ undeclared (first use in this function)
htslib/hfile_libcurl.c:93: error: (Each undeclared identifier is reported only once
htslib/hfile_libcurl.c:93: error: for each function it appears in.)
error: Setup script exited with error: command 'gcc' failed with exit status 1
Hi everyone, I have successfully run the setup script, but I am stuck with this error while trying to install Oncotator. Any thoughts would be much appreciated. Thanks!
python setup.py install [... everything is running ...]
pysam: htslib configure options: --enable-libcurl
pysam: libcurl of builtin htslib has been enabled, adding shared libcurl and libcrypto
package init file 'htslib/init.py' not found (or not a regular file) package init file 'htslib/htslib/init.py' not found (or not a regular file) package init file 'samtools/init.py' not found (or not a regular file) package init file 'bcftools/init.py' not found (or not a regular file) package init file 'samtools/win32/init.py' not found (or not a regular file) warning: no files found matching 'KNOWN_BUGS' warning: no files found matching 'THANKS' warning: no files found matching 'samtools/configure' warning: no files found matching 'samtools/config.mk.in' warning: no files found matching 'samtools/config.h.in' warning: no files found matching 'tests/pysam_data' warning: no files found matching 'tests/tabix_data' htslib/hfile_libcurl.c: In function ‘easy_errno’: htslib/hfile_libcurl.c:93: error: ‘CURLE_NOT_BUILT_IN’ undeclared (first use in this function) htslib/hfile_libcurl.c:93: error: (Each undeclared identifier is reported only once htslib/hfile_libcurl.c:93: error: for each function it appears in.) error: Setup script exited with error: command 'gcc' failed with exit status 1