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broadinstitute / oncotator

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COSMIC wrong annotation #374

Closed romagnolid closed 5 years ago

romagnolid commented 5 years ago

I noticed that some variants are annotated with COSMIC regardless of the protein change. I wonder if that's an expected behaviour.

Hugo_Symbol Protein_Change COSMIC_overlapping_mutations
FANCL p.F36L p.F36F(1)
LeeTL1220 commented 5 years ago

When the tool was originally designed, the users wanted anything that overlapped. So this is by design.

romagnolid commented 5 years ago

Thanks for the clarification.