COSMIC wrong annotation

broadinstitute / oncotator

Other

67 stars 33 forks source link

Closed romagnolid closed 5 years ago

romagnolid commented 5 years ago

I noticed that some variants are annotated with COSMIC regardless of the protein change. I wonder if that's an expected behaviour.

Hugo_Symbol	Protein_Change	COSMIC_overlapping_mutations
FANCL	p.F36L	p.F36F(1)

LeeTL1220 commented 5 years ago

When the tool was originally designed, the users wanted anything that overlapped. So this is by design.

romagnolid commented 5 years ago

Thanks for the clarification.