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broadinstitute / palantir-workflows

Utility workflows for the DSP hydro.gen team (formerly palantir)
BSD 3-Clause "New" or "Revised" License
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New Utilities WDL: DownsampleAndCollectCoverage #132

Closed michaelgatzen closed 1 year ago

michaelgatzen commented 1 year ago

See Readme for description

michaelgatzen commented 1 year ago

@rickymagner I checked the binary file header of the output file and it's a valid CRAM file

rickymagner commented 1 year ago

Yeah I checked that it was MergeSamFiles that didn't write crams properly