SimpleBenchmark doesn't run without providing evaluation bed file

broadinstitute / palantir-workflows

Utility workflows for the DSP hydro.gen team (formerly palantir)

BSD 3-Clause "New" or "Revised" License

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SimpleBenchmark doesn't run without providing evaluation bed file #138

Closed rickymagner closed 12 months ago

rickymagner commented 1 year ago

The evaluation_bed input used for vcfeval in SimpleBenchmark does not work properly. It is supposed to be an optional file input, but the WDL always crashes when running in Terra if you don't provide it.

michaelgatzen commented 1 year ago

Also fix discrepancy mentioned via slack DM on April 7, 2023 11:51am