A very short PR to add a utility for automating the process of creating an IGV session XML given (optional) list of bams, vcfs, or interval files (.interval_list or .bed). Also takes in a ref_fasta to customize the reference track.
This is meant to replace a task used in BenchmarkVCFs.wdl and will be imported in a future version of our benchmarking scripts, but wanted to separate this task out so other folks can easily drop it into their workflows.
A very short PR to add a utility for automating the process of creating an IGV session XML given (optional) list of bams, vcfs, or interval files (.interval_list or .bed). Also takes in a
ref_fastato customize the reference track.This is meant to replace a task used in
BenchmarkVCFs.wdland will be imported in a future version of our benchmarking scripts, but wanted to separate this task out so other folks can easily drop it into their workflows.