Automatically enforce PlateID value for the Metadata_Plate column

broadinstitute / pe2loaddata

Script to parse a Phenix metadata XML file and generate a .CSV for CellProfiler's loaddata module

BSD 2-Clause "Simplified" License

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Open pearlryder opened 3 years ago

pearlryder commented 3 years ago

The problem:

we often rename plates to remove spaces and to get our preferred formatting
however, then we we create load_data.csv, the Metadata_Plate column does not match our updated names

Requested enhancement:

If we could force the value of the Metadata_Plate column to match the updated plate names, that would reduce downstream .csv fixing