ModuleNotFoundError - Githubissues

When I run on our local Linux system (not AWS), recent changes seem to have caused a problem:

logand05@amrndhl1317 ~/github/pe2loaddata $ pe2loaddata --help
Traceback (most recent call last):
  File "/home/logand05/.local/bin/pe2loaddata", line 11, in <module>
    load_entry_point('pe2loaddata', 'console_scripts', 'pe2loaddata')()
  File "/nfs/grid/software/RHEL7/ib/software/python/3.8.0/lib/python3.8/site-packages/pkg_resources/__init__.py", line 489, in load_entry_point
    return get_distribution(dist).load_entry_point(group, name)
  File "/nfs/grid/software/RHEL7/ib/software/python/3.8.0/lib/python3.8/site-packages/pkg_resources/__init__.py", line 2852, in load_entry_point
    return ep.load()
  File "/nfs/grid/software/RHEL7/ib/software/python/3.8.0/lib/python3.8/site-packages/pkg_resources/__init__.py", line 2443, in load
    return self.resolve()
  File "/nfs/grid/software/RHEL7/ib/software/python/3.8.0/lib/python3.8/site-packages/pkg_resources/__init__.py", line 2449, in resolve
    module = __import__(self.module_name, fromlist=['__name__'], level=0)
ModuleNotFoundError: No module named 'src'

When I revert to June 11, and reinstall, it seems to work fine:

logand05@amrndhl1317 ~/github/pe2loaddata $ git checkout 418517928a1af44a828895e1d1e00334c21a6ee5 .
logand05@amrndhl1317 ~/github/pe2loaddata $ python3 -m pip install -e . --user
Obtaining file:///home/logand05/github/pe2loaddata
Requirement already satisfied: click>=7.1.2 in /home/logand05/.local/lib/python3.8/site-packages (from pe2loaddata==0.1.0) (8.0.1)
Requirement already satisfied: PyYAML>=5.3.1 in /home/logand05/.local/lib/python3.8/site-packages (from pe2loaddata==0.1.0) (5.4.1)
Installing collected packages: pe2loaddata
  Attempting uninstall: pe2loaddata
    Found existing installation: pe2loaddata 0.1.1
    Uninstalling pe2loaddata-0.1.1:
      Successfully uninstalled pe2loaddata-0.1.1
  Running setup.py develop for pe2loaddata
Successfully installed pe2loaddata-0.1.0
logand05@amrndhl1317 ~/github/pe2loaddata $ pe2loaddata --help
Usage: pe2loaddata [OPTIONS] CONFIGURATION OUTPUT

Options:
  --index-directory PATH   directory containing the index file and images
  --index-file FILE        the Phenix index XML metadata file
  --search-subdirectories  Look for image files in the index-directory and
                           subdirectories
  --illum-only             Run only the step to append illum columns to an
                           existing file. The "output" CSV will be used
                           instead as input, and you will need to pass
                           --illum-directory and --plate-id, and
                           --illum_output.
  --illum / --no-illum     Run both the main pe2loaddata function and the
                           append_illum function. Default is false; if true
                           you need to pass --illum-directory, --plate_id, and
                           --illum_output.
  --illum-directory PATH   directory where illumination correction images are
                           or will be
  --plate-id TEXT          Plate ID
  --illum-filetype TEXT    The file type of the illum files- in CP2.X, this
                           should be '.mat', in CP3.X or 4.X '.npy'
  --illum-output FILE      The destination file for the illum output if both
                           pe2loaddata and append illum are being run
  --sub-string-out TEXT    A part of the row (typically a path) you want
                           substituted by sub-string-in
  --sub-string-in TEXT     A part of the row (typically a path) you want
                           substituted instead of sub-string-out
  --help                   Show this message and exit.

broadinstitute / pe2loaddata

ModuleNotFoundError #25