Closed Laura809 closed 7 years ago
@Laura809 From the first few lines of output, it looks like you have a Java 7 JDK installed, but you need a Java 8 JDK to build Picard. Try running javac -version
to verify.
when running to check the version i get javac 1.7.0_51
However they have installed the newer version which i can load module load apps/java/8.0.151/noarch
and then running Picard....do you reckon i should ask to do something more specific in the cluster?
Thanks
Yes, if you want to build Picard (as opposed to just running it, which you can do without building it by downloading the zip file), need to install a Java 8 JDK. You may have a Java 8 JRE/runtime, but your JDK appears to be Java 7.
ok, thanks. I have the zip file under my user in the cluster (which i have downloaded from here: https://github.com/broadinstitute/picard/releases/tag/2.14.0) but when running ./gradlew test
it gives me back the error. Is there any other way i can test whether my zip version is working?
Thanks a lot for your time!
You're still trying to build - if you just want to run, you don't need to run gradle at all. See the instructions for installing and validating the zip here.
Thanks a lot! picard.jar works just fine!
Glad you got it working!
Hi,
Im trying to build picard in my user environment of my institutional cluster and i get the following error:
Java 1.8 is installed; I cloned the repo and verified that there is a hidden .git directory. When running
./gradlew shadowJar --info --stacktrace
I get the following:
and when adding
--debug
Thanks a lot in advance for your time and support, Laura