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broadinstitute / pilon

Pilon is an automated genome assembly improvement and variant detection tool
GNU General Public License v2.0
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Exception in thread "main" htsjdk.samtools.util.RuntimeIOException: java.io.FileNotFoundException: align_filer.bam #131

Open zhuanghemu opened 3 years ago

zhuanghemu commented 3 years ago

HI Exception in thread "main" htsjdk.samtools.util.RuntimeIOException: java.io.FileNotFoundException: align_filer.bam bowtie) [root@localhost TK191210G0464]# ls align.bam align_filter.bam align_markdup.bam.bai N09HSA23_2.fq.gz N09HSA23-ZHM.fa.amb N09HSA23-ZHM.fa.bwt N09HSA23-ZHM.fa.sa align.bam.bai align_markdup.bam N09HSA23_1.fq.gz N09HSA23-ZHM.fa N09HSA23-ZHM.fa.ann N09HSA23-ZHM.fa.pac

marce-sarrias commented 3 years ago

Hi,

I'm having a similar issue.. how did you fix it?