alimayy
commented
3 years ago @kattweigh changing the '--fix' parameter value from 'all' to 'bases' should help. The latter doesn't fix for local assembly errors which saves time
Open kattweigh opened 3 years ago
alimayy
commented
3 years ago @kattweigh changing the '--fix' parameter value from 'all' to 'bases' should help. The latter doesn't fix for local assembly errors which saves time
Hi there!
I am using pilon to polish contigs produced in a hybrid assembly using opera and pilon is running at a really slow rate - about 102 contigs per hour. I have allocated 48 CPUs and 1.5Tb mem to the job and specified 200Gb to each process.
Are there any ways to improve the speed?
Thank you!
Kat