Open jodyphelan opened 2 years ago
I ran into an issue when using bcftools to filter VCF files output from pilon.
$ bcftools filter -e 'FMT/DP<10' example.vcf Error: cannot use arithmetic operators to compare strings and numbers
I think the issue is that DP is defined as a String rather than an Integer in the header
##FORMAT=<ID=DP,Number=1,Type=String,Description="Approximate read depth; some reads may have been filtered">
Is there a reason for this?
I ran into an issue when using bcftools to filter VCF files output from pilon.
I think the issue is that DP is defined as a String rather than an Integer in the header
Is there a reason for this?