broadinstitute / pilon

Pilon is an automated genome assembly improvement and variant detection tool
GNU General Public License v2.0
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fasta headers not appended but overwritten #151

Open hkaspersen opened 2 years ago

hkaspersen commented 2 years ago

Hello, and thank you for creating Pilon!

I am running Pilon version 1.24, and I noticed that the headers of my improved fasta files didn't contain the original information with "_pilon" appended, but only contained "1_pilon", "2_pilon" etc for all contigs. These are assemblies from Unicycler:

Original header:

1 length=1200471 depth=0.89x

New header:

1_pilon

Is there any way to prevent this? I would very much like to keep the original information. Thanks in advance!