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broadinstitute / pilon

Pilon is an automated genome assembly improvement and variant detection tool
GNU General Public License v2.0
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no bam file #153

Open rmormando opened 2 years ago

rmormando commented 2 years ago

I just assembled some yeast genomes with flye and would like to polish those assemblies with this tool but I don't have a sorted BAM file from that assembly.

how do I make one?

mlarjim commented 1 year ago

Hi! this is a non official tutorial, hope it is helpful https://timkahlke.github.io/LongRead_tutorials/ECR_P.html