What does "Large collapsed region" mean in standard output?

broadinstitute / pilon

Pilon is an automated genome assembly improvement and variant detection tool

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What does "Large collapsed region" mean in standard output? #172

Open ryanskiba opened 1 month ago

ryanskiba commented 1 month ago

I ran Pilon 1.24 and from the standard output got a long list of "Large collapsed regions". However, I can't find any explanation for this in the wiki, or with a google search. Am I missing something? Thanks.