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broadinstitute / pilon

Pilon is an automated genome assembly improvement and variant detection tool
GNU General Public License v2.0
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Cannot handle : in contig names when using --targets #29

Closed bwlang closed 7 years ago

bwlang commented 7 years ago

":" is always interpreted by pilon as a separator of start and stop to a region. Quiver sometimes adds : characters.

I'll send a pull request shortly